NOE Medtech

Machine Learning for Clinical Literature Review

MedTech – Extraction, Selection and Analysis of Scientific Articles

ML and NLP pipelines supporting publication screening, evidence extraction and clinical-literature review.

An assisted literature review

Screening, scoring and extraction of publications, with humans keeping the decision

Project Details

Client

NOE Medtech

Sector

MedTech – Extraction, Selection and Analysis of Scientific Articles

Year

2021

Key Technologies
PythonTensorFlowSpaCyDashDocker

Mission

Scientific Lead & Data Scientist - Clinical Literature Review

ML for Clinical Literature Review

Long-term assignment, Lille, Loos and remote, France.

Development of an algorithm to extract and select scientific articles for the clinical evaluation of medical devices. Design of an automated pipeline combining web scraping, machine learning and interactive visualization to speed up the preparation of clinical evaluation reports (CE marking). Automated collection of scientific references: extraction, sorting and metadata enrichment from PubMed, Google Scholar, ScienceDirect, Embase. Optimization of the systematic review process. Hybrid (human + ML) classification of relevant studies according to defined inclusion/exclusion criteria (PICO/PICOS, PRISMA…). Integration of automated scoring, a ranking module and optional manual selection to ensure the quality and transparency of the regulatory process. Generation of analytical dashboards and dynamic reporting. Design of a SaaS interface in Python/Dash for the visualization, tracking and auditability of the entire process, compliant with regulatory requirements (MEDDEV 2.7/1, MDCG…). Multi-format export: BibTeX, CSV, XLSX, serving business users (regulatory affairs, consultants, medical device manufacturers). Research & development in artificial intelligence applied to healthcare regulation. Implementation of advanced Natural Language Processing (NLP) methods to extract structured information on device safety and performance. Modular approach: prototyping, iterative testing, benchmarking against the state of the art (Abstrackr, Rayyan, ASReview…).

Contexte & Environnement

Collaboration: Deeptech start-up (WEEKI) + regulatory affairs expert firm (B CONSULTANT), supported by a multidisciplinary university team. "Human-in-the-loop" approach: The user stays in control of the decision; the algorithm assists and explains each step, fostering ownership and trust. Interoperability: Compatibility with healthcare frameworks (PRISMA, PROSPERO), scalable SaaS architecture (microservices).

Team

Scientific Lead & Data Scientist, with Weeki, the B Consultant firm and a university team

Environment

Lille, Loos and remote – Python/Dash SaaS, ReactJS, Docker, Heroku/Cloud

Objectifs Cles

1Drastic reduction in regulatory literature review time (from several weeks to a few hours).
2Improved reproducibility, traceability and transparency of clinical evaluation processes.
3Helping regulatory affairs professionals build their AI skills.
4Industrialization of regulatory documentation workflows (CE/EU-MDR).

Technologies & Infrastructure

PythonBeautiful SoupSeleniumScrapyscikit-learnPandasNumPyTensorFlowSpaCyNLTKBERTFlairDashPlotlyReactJSDockerHeroku

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